Vol. 11 No. 9 (2025): September
Open Access
Peer Reviewed

Genetic Polymorphisms of the 3'-Untranslated Regions (3'-UTR) of the HSP 70 Gene in Moa Buffalo (Bubalus bubalis)

Authors

DOI:

10.29303/jppipa.v11i9.11685

Published:

2025-09-25

Downloads

Abstract

The Heat Shock Protein 70 (HSP70) gene, specifically the 3-Untranslated Region (3-UTR), is critical for regulating mRNA stability and translation under heat stress. This study aimed to identify genetic polymorphisms in the 3-UTR of the HSP70 gene in Moa buffalo (Bubalus bubalis) and evaluate its potential role in heat adaptation. A total of 65 hair follicle samples (55 Moa buffalo and 10 Banten buffalo) were collected, followed by amplification by PCR and sequencing of the PCR product of the 3'-UTR regions. Alignment results from the 3'-UTR region showed the presence of 2 major polymorphic SNPs, i.e g.1904C>A, and g.1910A>G. SNP (g.1904C>A) was found to be a cytosine (C) to adenine (A) substitution mutation type, and SNP g.1910A>G an adenine (A) to guanine (G) substitution. The discovery of 2 SNPs in the 3-UTR of the HSP70 gene in Moa buffalo is very important for the development of genetic markers, helping to understand the mechanism of heat adaptation, to the conservation and improvement of livestock performance, especially Moa buffalo living in tropical environments.

Keywords:

HSP70 gene Moa buffalo Mutation Polymorphism Thermal stress

References

Abbas, Z., Hu, L., Fang, H., Sammad, A., Kang, L., Brito, L. F., Xu, Q., & Wang, Y. (2020). Association Analysis of Polymorphisms in the 5′ Flanking Region of the HSP70 Gene with Blood Biochemical Parameters of Lactating Holstein Cows under Heat and Cold Stress. Animals, 10(11), 2016. https://doi.org/10.3390/ani10112016

Abbaya, H. Y., Kabir, M., Iyiola-Tunji, A. O., Hamidu, D., Moloi, S., Yakubu, H. G., & Malgwi, I. H. (2024). Genetic Analysis of the Heat Shock Protein (HSP90AA1) Gene in Various Nigerian Indigenous Cattle Breeds. Journal of Dairy, Veterinary & Animal Research, 13(2), 76–81. https://doi.org/10.15406/jdvar.2024.13.00353

Badri, T., Alsiddig, M., Lian, L., Cai, Y., & Wang, G. (2021). Single nucleotide polymorphisms in HSP70–1 gene associated with cellular heat tolerance in Chinese Holstein cows. Animal Gene, 20, 1–7 10 1016 2021 200114. https://doi.org/10.1016/j.angen.2021.200114

Bartel, D. P. (2018). Metazoan MicroRNAs. Cell, 173(1), 20–51. https://doi.org/10.1016/j.cell.2018.03.006

Cwiklinska, H., Cichalewska-Studzinska, M., Selmaj, K. W., & Mycko, M. P. (2020). The heat shock protein hsp70 promotes th17 genes’ expression via specific regulation of microrna. International Journal of Molecular Sciences, 21(8), 2823 10 3390 21082823. https://doi.org/10.3390/ijms21082823

Domple, V. D., Padol, A. R., Malapure, C., Kamdi, B. P., & Sarode, R. M. (2021). Effect of melatonin supplementation on heat shock proteins expression profile in buffalo calves under summer stress. International Journal of Chemical Studies, 9(1), 1197–1203. https://doi.org/10.22271/chemi.2021.v9.i1q.11388

Haas, U., Sczakiel, G., & Laufer, S. (2012). MicroRNA-mediated regulation of gene expression is affected by disease-associated SNPs within the 3′-UTR via altered RNA structure. RNA Biology, 9(6), 924–937. https://doi.org/10.4161/rna.20497

Habib, H. N., Khudaier, B. Y., Hassan, A. F., & Saleh, W. M. M. (2017). Association of HSP70 Gene Polymorphism with Some of Fresh Semen Characters in Summer and Winter to Iraqi Holstein Bulls. International Journal of Scientific Research, 6(July), 623–625. Retrieved from https://shorturl.at/mGKWv

Hariyono, D. N. H., & Prihandini, P. W. (2022). Association of selected gene polymorphisms with thermotolerance traits in cattle – A review. Animal Bioscience, 35(11), 1635–1648. https://doi.org/10.5713/ab.22.0055

Hu, L., Fang, H., Abbas, Z., Luo, H., Brito, L. F., Wang, Y., & Xu, Q. (2024). The HSP90AA1 gene is involved in heat stress responses and its functional genetic polymorphisms are associated with heat tolerance in Holstein cows. Journal of Dairy Science, 107(7), 5132–5149. https://doi.org/10.3168/jds.2023-24007

Ismaeel, F., Moussa, M., Eltahir, H., & Shakam, H. (2024). Identification of single nucleotide polymorphisms (SNPs) in 5’and 3’ untranslated regions (5’ UTR and 3′ UTR) of HSP70 gene in some Western Sudan indigenous cattle. Journal of Advanced Veterinary Research, 14(4), 742–748. Retrieved from https://advetresearch.com/index.php/AVR/article/view/1841.

Kim, W. S., Jo, Y. H., Nejad, J. G., & Lee, H. G. (2025). Effects of Heat Shock Protein 70 Gene Polymorphism on Heat Resistance in Beef and Dairy Calves Based on Proliferation and Heat Shock Protein 70 Gene Expression in Peripheral Blood Mononuclear Cells and Hair Follicles. Animals, 15(4), 475. https://doi.org/10.3390/ani15040475

Koopaee, H. K., & Koshkoiyeh, A. E. (2014). SNPs genotyping technologies and their applications in farm animals breeding programs: review. Brazilian Archives of Biology and Technology, 57(1), 87–95. https://doi.org/10.1590/S1516-89132014000100013

Kumar, A., Ashraf, S., Goud, T. S., Grewal, A., Singh, S. V., Yadav, B. R., & Upadhyay, R. C. (2015). Expression profiling of major heat shock protein genes during different seasons in cattle (Bos indicus) and buffalo (Bubalus bubalis) under tropical climatic condition. Journal of Thermal Biology, 51, 55–64. https://doi.org/10.1016/j.jtherbio.2015.03.006

Kumar, B., Sahoo, A. K., Dayal, S., Das, A. K., Taraphder, S., Batabyal, S., Ray, P. K., & Kumari, R. (2019). Genetic profiling of Hsp70 gene in Murrah buffalo (Bubalus bubalis) under sub-tropical climate of India. Cell Stress and Chaperones, 24(6), 1187–1195. https://doi.org/10.1007/s12192-019-01042-7

Maulana, T., Putra, W. P. B., & Noor, R. R. (2025). Insilico analyses of heat shock protein (HSP 70) variation in Asian buffaloes. BIO Web of Conferences, 171, 01006. https://doi.org/10.1051/bioconf/202517101006

Mayr, C. (2017). Regulation by 3′-Untranslated Regions. Annual Review of Genetics, 51(1), 171–194. https://doi.org/10.1146/annurev-genet-120116-024704

Mishra, S. R. (2021). Thermoregulatory responses in riverine buffaloes against heat stress: An updated review. Journal of Thermal Biology, 96, 102844. https://doi.org/10.1016/j.jtherbio.2021.102844

Pires, B. V., Stafuzza, N. B., Lima, S. B. G. P. N. P., Negrão, J. A., & Paz, C. C. P. (2019). Differential expression of heat shock protein genes associated with heat stress in Nelore and Caracu beef cattle. Livestock Science, 230, 103839 10 1016 2019 103839. https://doi.org/10.1016/j.livsci.2019.103839

Prasanna, J. S., Rao, S. T. V., Prakash, M. G., Rathod, S., Kalyani, P., & Reddy, B. R. (2021). Association of SSCP Polymorphisms of HSP70 Gene with Physiological, Production and Reproduction Performance in Sahiwal and Crossbred Cows. Asian Journal of Dairy and Food Research, 41(Of), 150–155. https://doi.org/10.18805/ajdfr.DR-1796

Prihandini, P. W., Primasari, A., Aryogi, A., Luthfi, M., & Hariyono, D. N. H. (2022). Genetic polymorphisms of the 5’ untranslated regions of the HSP70 gene in Indonesian cattle populations. Veterinary World, 15(1), 168–172. https://doi.org/10.14202/vetworld.2022.168-172

Raza, S. H. A., Abdelnour, S. A., Dhshan, A. I. M., Hassanin, A. A., Noreldin, A. E., Albadrani, G. M., Abdel-Daim, M. M., Cheng, G., & Zan, L. (2021). Potential role of specific microRNAs in the regulation of thermal stress response in livestock. Journal of Thermal Biology, 96, 102859. https://doi.org/10.1016/j.jtherbio.2021.102859

Rehman, S. ur, Nadeem, A., Javed, M., Hassan, F., Luo, X., Khalid, R. B., & Liu, Q. (2020). Genomic Identification, Evolution and Sequence Analysis of the Heat-Shock Protein Gene Family in Buffalo. Genes, 11(11), 1388. https://doi.org/10.3390/genes11111388

Romero-Ramírez, L. A., Cervantes Acosta, P., Domínguez-Mancera, B., & Hernández-Beltrán, A. (2024). Association of Hsp70 locus polymorphism with thermotolerance and ailment occurrence in Gulf Creole cattle within intensive systems. Agro Productividad, 17(8), 53–65. https://doi.org/10.32854/agrop.v17i8.2664

Rumanta, M., Kunda, R. M., Volkandari, S. D., & Munir, I. M. (2023). Impact of Environmental Geographic toward Point Mutations in Exon 1 of Growth Differentiation Factor (GDF9) Gene in Kosta and Lakor Goat Breeds. Jurnal Penelitian Pendidikan IPA, 9(6), 4813–4819. https://doi.org/10.29303/jppipa.v9i6.3794

Sharma, P., Sharma, A., Sodhi, M., Verma, P., Parvesh, K., Swami, S. K., Jast, A., Shandilya, U. K., & Mukesh, M. (2019). Characterizing binding sites of heat responsive microRNAs and their expression pattern in heat stressed PBMCs of native cattle, exotic cattle and riverine buffaloes. Molecular Biology Reports, 46(6), 6513–6524. https://doi.org/10.1007/s11033-019-05097-8

Skeeles, L. E., Fleming, J. L., Mahler, K. L., & Toland, A. E. (2013). The Impact of 3′UTR Variants on Differential Expression of Candidate Cancer Susceptibility Genes. PLoS ONE, 8(3), e58609. https://doi.org/10.1371/journal.pone.0058609

Song, J., Hao, L., Wei, W., Yang, R., Wang, C., Geng, H., Li, H., Wang, S., Lu, G., Feng, T., Sun, X., Liu, S., Wang, G., & Cheng, Y. (2020). A SNP in the 3′UTR of the porcine IGF-1 gene interacts with miR-new14 to affect IGF-1 expression, proliferation and apoptosis of PK-15 cells. Domestic Animal Endocrinology, 72(106430), 106430. https://doi.org/10.1016/j.domaniend.2019.106430

Suhendro, I., Noor, R. R., Jakaria, J., Priyanto, R., Manalu, W., & Andersson, G. (2024). Association of heat-shock protein 70.1 gene with physiological and physical performance of Bali cattle. Veterinary World, 17(1), 17–25. https://doi.org/10.14202/vetworld.2024.17-25

Utami, P., & Kunda, R. M. (2023). Surface ultrastructure of tick (Acari: Ixodidae) on Moa buffalo from Southwest Maluku District, Indonesia. Biodiversitas Journal of Biological Diversity, 24(6), 3230–3235. https://doi.org/10.13057/biodiv/d240617

Xu, J., Hu, L., Ning, J., Zhang, F., Xu, Q., & Wang, Y. (2025). Identification of single nucleotide polymorphisms (SNPs) associated with heat stress and milk production traits in Chinese holstein cows. BMC Genomics, 26(1), 534. https://doi.org/10.1186/s12864-025-11716-5

Author Biographies

Maman Rumanta, Universitas Terbuka

Author Origin : Indonesia

Leonard Raden Hutasoit, Universitas Terbuka

Author Origin : Indonesia

Rony Marsyal Kunda, Universitas Pattimura

Author Origin : Indonesia

Prasetyarti Utami, Universitas Terbuka

Author Origin : Indonesia

Downloads

Download data is not yet available.

How to Cite

Rumanta, M., Hutasoit, L. R., Kunda, R. M., & Utami, P. (2025). Genetic Polymorphisms of the 3’-Untranslated Regions (3’-UTR) of the HSP 70 Gene in Moa Buffalo (Bubalus bubalis). Jurnal Penelitian Pendidikan IPA, 11(9), 40–46. https://doi.org/10.29303/jppipa.v11i9.11685